species:   Fugra
pid:       PID0965
parent:    FgmilR-7dps-27
paralog:   
locus:     NC_026474.1:8633631-8633744
matures:   ['UAGCCAUUGUAGACGCCGCAAG', 'UGCGCGCUUCUUUUCGUCUUGGCUGUG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:8633631-8633744

1 out of bounds
7 alignments
6 proper strand
6 stranded perfect matches

************************                                                             *****************************
AGUAGCCAUUGUAGACGCCGCAAGCUUCUGGUAUCCCGACGGCCAAAGAAAAGGACCUCCCGGCUCUCUAGGAUUGACGGGUUCACUUGCGCGCUUCUUUUCGUCUUGGCUGUG
..((((((.((.(((.((((((((..((((..((((.((.((((..((........))...)))).))..))))...))))....)))))).)).)))...))...))))))..
--UAGCCAUUGUAGACGCCGCAAG------------------------------------------------------------------------------------------ l=22 a=5 c
---------------------------------------------------------------------------------------UGCGCGCUUCUUUUCGUCUUGGCUGUG l=27 a=0 c*
--UAGCCAUUGUAGACGCCGCAAG------------------------------------------------------------------------------------------ l=22 a=5 ma
---------------------------------------------------------------------------------------UGCGCGCUUCUUUUCGUCUUGGCUGUG l=27 a=0 ma*

---AGCCAUUGUAGACGCCGCAA------------------------------------------------------------------------------------------- l=20 a=1 
--UAGCCAUUGUAGACGCCGCAAG------------------------------------------------------------------------------------------ l=22 a=5 (c,ma)

mb-01011
ax-1001111
ku-01
ss-111111101010
fn-111
